Graphing Day 10 DMRs by treatment.

Update: Better labels on graphs added.

Edit: just realized that my graphs are poorly titled. They are graphing the percent methylation at DMR sites. Will update them as soon as I can.

Worked on graphing Day 10 DMRs by treatment. I first tried a plot with means by treatment for all DMRs in a single plot but that was difficult to read, so I settled on individual box plots by location as I felt this captured both the location as well as the variation in the data.

A few example plots:

screen-shot-2017-02-01-at-8-57-02-am

screen-shot-2017-02-01-at-8-57-13-am

screen-shot-2017-02-01-at-8-57-24-am

Code, and a walkthrough of the process is available here

A PDF of the plots can be downloaded here

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