Effects of coverage cutoffutoff values on # of DMRs for Day 10 and Day 135 analyses
Spent the morning running the Day 10 and Day 135 analyses again, this time with coverage cutoff values of 3x, 5x and 7x. Each lowering of the cutoff threshold produced ~ twice as many DMRs.
|Coverage Cutoff||# of DMRs For Day 10 Samples||# of DMRs for Day 135 Samples|
I have a directory on scaphapoda with the .bed files, MACAU results files, and boxplots for methylation proportion at each DMR. It can be found here