Following the instructions from here made it all pretty straight forward. You heard that right, a bioinformatics program that installed properly and straight forward the first time. They do exist!
Lets give it a test run.
First, we check that all the dependencies we need are installed:
That looks good.
Thats not so good, so lets download and prep the databases we need.
after running dammit databases --install and waiting around, it looks like were ready to kick the tires with Marcos’ fasta file by executing dammit annotate ~/Documents/marcos_trinity/Trinity.fasta.
Then we wait for some output!
Roberts Lab 