Installing dammit on Emu:

Following the instructions from here made it all pretty straight forward. You heard that right, a bioinformatics program that installed properly and straight forward the first time. They do exist!

Lets give it a test run.

First, we check that all the dependencies we need are installed:

Screen Shot 2017-04-20 at 9.25.20 AM

That looks good.

Screen Shot 2017-04-20 at 9.27.53 AM

Thats not so good, so lets download and prep the databases we need.

after running dammit databases --install and waiting around, it looks like were ready to kick the tires with Marcos’ fasta file by executing dammit annotate ~/Documents/marcos_trinity/Trinity.fasta.

Then we wait for some output!