C. virginica methylation analysis: More/better trimming

I re-ran the data files through a different trimming program, Trimmomatic, with a specified Illumina TruSeq adapter set and got better results from FastQC. Running things through Bismark once more, and we’ll see if we get better mapping rates that way. Tomorrow I’ll likely run stuff through BSMap as well to see if I can match, or beat the ~20% rate Steven got comparing to the gigas genome.

New MultiQC report

R notebook

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