Sam’s Notebook:Assembly Stats – Geoduck Hi-C Assembly Comparison

0000-0002-2747-368X

Ran the following Quast command to compare the two geoduck assemblies provided to us by Phase Genomics:

 /home/sam/software/quast-4.5/quast.py \ -t 24 \ --labels 20180403_pga,20180421_pga \ /mnt/owl/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts\ results\ 2018-04-03\ 11\:05\:41.596285/PGA_assembly.fasta \ /mnt/owl/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts\ results\ 2018-04-21\ 18\:09\:04.514704/PGA_assembly.fasta 
Results:

Quast Output folder: results_2018_04_30_11_16_04/

Quast report (HTML): results_2018_04_30_11_16_04/report.html

20180430_quast_pga_assemblies.png

The two assemblies are nearly identical. Interesting…

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