[code]/gscratch/srlab/programs/trinity/Trinity --seqType fq ...

/gscratch/srlab/programs/trinity/Trinity \
--seqType fq \
--max_memory 100G \
--left /gscratch/srlab/sr320/data/geoduck-RNA-seq/NR012_S1_L001_R1_001.fastq,\
/gscratch/srlab/sr320/data/geoduck-RNA-seq/NR012_S1_L002_R1_001.fastq \
--right /gscratch/srlab/sr320/data/geoduck-RNA-seq/NR012_S1_L001_R2_001.fastq,\
/gscratch/srlab/sr320/data/geoduck-RNA-seq/NR012_S1_L002_R2_001.fastq \
--trimmomatic \
--CPU 28