Found out that there were several large files in the project-virginica-oa repository (ex. bam files from bismark runs) that maxed out hummingbird’s hard drive. The solution was to stop running bismark on hummingbird and use Mox instead. To continue to use hummingbird for any other analysis, I needed to move the large files from hummingbird to gannet. I created checksums for all of my large file folders, than moved them to this directory on gannet. Once on gannet, I deleted the files off hummingbird and synced my Github repository. Lab notebook links may be broken. In terms of workflows, any time I generate a large file in a repository that cannot be synced to Github, I should move it to gannet.