Sam’s Notebook: Data Received – Chionoecetes bairdi RNAseq & FastQC Analysis


We received Grace’s 100bp PE NovaSeq (Illumian) RNAseq data from the Northwest Genomics Center today.

Data was downloaded via their Aspera browser plugin and rsynced to:

MD5 checksums were generated (md5sum on Ubuntu):

  321ec408ba7e0f0be1929ca44871f963 304428_S1_L001_R1_001.fastq.gz b95c69f755c9c42d9203429119d4234d 304428_S1_L001_R2_001.fastq.gz a0fd8db312057dedd480231d4d125fd3 304428_S1_L002_R1_001.fastq.gz c6e70ef7f3c8a866851a1b9453aef36a 304428_S1_L002_R2_001.fastq.gz  

FastQC analysis was run, followed by MultiQC.

Output folder (gannet/Atumefaciens):

MultiQC Report (HTML):

Nightingales spreadsheet was updated with file info and FastQC info:

from Sam’s Notebook