Per this GitHub issue, I’m IDing transposable elements (TEs) in the Crassostrea gigas genome. Even though the C.gigas genome should be fully annotated, Steven wants a comparable set of analyses to compare to the Crassostrea virginica TE mapping we previously performed.
I used the Crassostrea gigas genome we have linked on our GitHub Genomic Resources wiki:
Analysis was performed in the following Jupyter Notebok (GitHub):
