Sam’s Notebook:

In our various attempts to get the Panopea generosa genome annotated in such a manner that we’re comfortable with (the previous annotation attempts we’re lacking any annotations in almost all of the largest scaffolds, which didn’t seem right), Steven stumbled across GenSAS, a web/GUI-based genome annotation program, so we gave it a shot.

This version of the genome annotation will be referred to as:

  • Panopea-generosa-vv0.74.a3

I uploaded the following to the GenSAS website to potentially use as “evidence files”:

Transcriptome FastA files (links to notebook entries):

TransDecoder protein FastA files (links to notebook entries)

Repeats Files