Sam’s Notebook: Data Wrangling – Create Panopea-generosa-vv0.74.a4 Intron and Intergenic BED Files

Since generating an updated Pgenerosa_v074 annotation, we also needed updated intergenic and intron bed files to put in the OSF repository for this project.

I generated intergenic and intron BED files by following along with Steven’s notebooks:

Steven intergenic BED file notebook (GitHub):

Steven intron BED file notebook (GitHub):

Here’s how I generated these two BED files.

Jupyter Notebook (GitHub):