Laura’s Notebook: Oly methylation analysis, Jan. 29th 2020

From the last meeting with Katherine and Steven, these were my tasks:

  • Re-do MACAU with pre-filtered count files <— DONE
  • Reannontate new MACAU results <— DONE
  • Reannonate DMLs <— DONE (unless I need to re-do DML filter settings)
  • DMG analysis
  • Figure out something comparable to Fst on DMLs and MACAU to do a correlation analysis
  • GO_MWU analysis redo with genes:
  • New methylation distance matrix to include just loci with new 75% threshold
  • Get manhattan distance for just DMLs
  • Get methods down on paper ASAP