SRA Submission – Ronits C.gigas Ploidy WGBS

A few days ago, we received the whole genome bisulfite sequencing (WBGS) data (20201110) from Ronit’s C.gigas diploid/triploid dessication/heat stress experiment (GitHub repo).

Now, I need to get these submitted to the NCBI short read archive (SRA).

For all publications, we should reference the SRA BioProject:

A summary table is provided below which includes individual SRA accessions for each sample:

Library_Name SeqID Tissue Ploidy Dessication Heat_Stress Library_kit SRA_BioProject SRA_accession
D11-C zr3534_1 ctenidia diploid yes no Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508698
D12-C zr3534_2 ctenidia diploid yes no Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508699
D13-C zr3534_3 ctenidia diploid yes no Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508700
D19-C zr3534_4 ctenidia diploid yes yes Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508701
D20-C zr3534_5 ctenidia diploid yes yes Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508702
T11-C zr3534_6 ctenidia triploid yes no Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508703
T12-C zr3534_7 ctenidia triploid yes no Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508704
T13-C zr3534_8 ctenidia triploid yes no Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508705
T19-C zr3534_9 ctenidia triploid yes yes Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508706
T20-C zr3534_10 ctenidia triploid yes yes Zymo-Seq WGBS Library Kit (Cat#: D5465) PRJNA678408 SRX9508707

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