GO-MWU Wrapup + Future Plans

Wrapup of GO-MWU Last post, I had run GO-MWU on my two analyses – Elevated Day 2 vs. Ambient Day 0+2 (individual libraries only), and Ambient Day 0+2+17 + Elevated Day 0 + Lowered Day 0 vs. Elevated Day 2 (individual and pooled libraries). I’ve been continuing on a bunch of different analyses and running them through my pipeline. Reminder: pipeline is kallisto matrix -> DESeq2 -> GO-MWU (with steps in between for formatting). I’ve ran the following pairwise comparisons all the way through both: Ambient Day 0 vs. Ambient Day 2 (individual libraries only) Ambient Day 0 vs. Ambient Day 17 (individual libraries only) Ambient Day 2 vs. Ambient Day 17 (individual libraries only) Ambient Day 2 vs. Elevated Day 2 (individual libraries only) Elevated Day 0 vs. Elevated Day 2 (individual libraries only) Here’s a link to all visualizations of significant GO categories, and here’s a link to…

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