job-name=cg-spur

#!/bin/bash
## Job Name
#SBATCH --job-name=cg-spur
## Allocation Definition
#SBATCH --account=coenv 
#SBATCH --partition=coenv
## Resources Nodes
#SBATCH --nodes=1
## Walltime (days-hours:minutes:seconds format)
#SBATCH --time=4-12:00:00
## Memory per node
#SBATCH --mem=120G
##turn on e-mail notification
#SBATCH --mail-type=ALL 
#SBATCH --mail-user=sr320@uw.edu
## Specify the working directory for this job
#SBATCH --chdir=/gscratch/scrubbed/sr320/033021-roslin-spur


# Load Python Mox module for Python module availability

module load intel-python3_2017




source /gscratch/srlab/programs/scripts/paths.sh



/gscratch/srlab/programs/ncbi-blast-2.10.1+/bin/blastx \
-query /gscratch/srlab/sr320/data/cg/rna.fna \
-db /gscratch/srlab/sr320/blastdb/ProteinsSpur5.0 \
-out /gscratch/scrubbed/sr320/033021-roslin-spur/CgRNA-blastx-spur.tab \
-num_threads 40 \
-max_target_seqs 1 \
-max_hsps 1 \
-outfmt "6 qaccver saccver evalue"

#sbatch

TWIP – Episode 9: Just the points

This week we go right into points and once again go down the rabbit hole of SNPs and DNA methylation.